Research

Agentic Reasoning: Reasoning LLMs with Tools for the Deep Research

A tool-using agent framework that extends LLM reasoning with web search, coding, and structured reasoning memory for deep research tasks.

Junde Wu, Jiayuan Zhu, Yuyuan LiuFeb 7, 2025arXiv12 min read
IMPORTANTAI AgentsAdvanced

Key takeaway

The work treats difficult research as an agentic loop: reason, call external tools, maintain structured context, and synthesize evidence.

Updated on Oct 2, 2026

01

Abstract

Agentic Reasoning augments a reasoning language model with three external capabilities: web search, code execution, and a structured Mind-Map memory. The system lets the model invoke these tools during reasoning rather than relying only on internal knowledge. The paper evaluates the approach on expert-level scientific question answering and deep-research tasks, reporting gains over direct reasoning and retrieval-based baselines.

02

Introduction

Deep research tasks require a model to gather changing information, perform computation, maintain intermediate context, and combine evidence over long reasoning chains. The paper frames tool use as part of the reasoning process itself: the reasoning model can decide when external information or computation is needed and then incorporate the resulting observation back into the chain.

03

Problem

A reasoning model can be limited by static knowledge, insufficient computation, and loss of coherence across long multi-step tasks. Retrieval added only outside the reasoning loop can also fail to provide information at the point where it is needed. The paper therefore asks how a reasoning model can selectively access tools and structured memory while preserving the main reasoning process.

04

Background

The work sits at the intersection of reasoning models, retrieval-augmented generation, tool use, and agentic systems. Unlike conventional RAG, where retrieval is commonly a separate preprocessing or generation step, Agentic Reasoning allows search and computation to occur during reasoning. Its structured Mind-Map memory retains entities and relationships from the reasoning process so earlier information can be revisited without reproducing the entire chain.

05

Methodology

The framework integrates three specialized agents into the reasoning loop. The Web-Search agent retrieves and summarizes external information, the Coding agent handles executable computation, and the Mind-Map agent converts relevant reasoning context into a structured graph of entities and relationships. The main reasoning model remains responsible for deciding when these capabilities are needed and for integrating their outputs into the solution.

Figure 1

Figure 1: The Overall Workflow of Agentic Reasoning

Original Figure 1 from the paper showing the reasoning LLM invoking Web-Search, Coding, and Mind-Map agents.

Original Figure 1 from Wu et al., Agentic Reasoning: A Streamlined Framework for Enhancing LLM Reasoning with Agentic Tools, arXiv:2502.04644v2.

Formula notes

Mathematical details

Retrieval similarity

Equation
score(q,d)=sim(E(q),E(d))score(q,d)=sim(E(q),E(d))

Rank candidate documents by similarity between the query embedding and document embedding.

E
-embedding function
d
-document
q
-query
sim
-similarity function

06

Architecture

The execution path is a closed loop: the reasoning model generates a tool invocation, the selected agent performs the operation, the result is returned to the reasoning context, and the model continues from the new evidence. The Mind-Map provides a structured representation of useful entities and relations. This separates retrieval, computation, and memory operations from the core reasoning model while keeping them available at test time.

07

Dataset

The primary evaluation includes GPQA, a PhD-level science benchmark spanning physics, chemistry, and biology. The paper reports results on GPQA Diamond and the broader GPQA Extended Set, alongside additional evaluations for GAIA and deep-research tasks. The deep-research evaluation includes FreshWiki-based article-generation tasks and human assessment of generated articles.

08

Training

The framework is primarily a test-time augmentation of a reasoning model rather than a new end-to-end training objective. The current paper version deploys the system with DeepSeek-R1 and delegates search, coding, and structured memory to specialized agents. The paper also uses dedicated models inside those agents, including DeepSeek-V3 for parts of search and Mind-Map processing and Claude-3.5-Sonnet for coding, with execution returning results to the main reasoning loop.

09

Experiments

Result board

GPQA

81.2%

Humanity’s Last Exam

23.8%

GAIA

66.13% average

Result

Deep-research article evaluation

10

Baselines

Baselines span direct reasoning, retrieval-augmented approaches, search-oriented systems, larger general-purpose toolboxes, and proprietary research systems where the comparison is available. The paper specifically studies alternatives including RAG and search variants and compares tool selection against Hugging Face’s seven-tool agent toolbox and LangChain’s much larger toolbox.

Evidence highlights

  • 01Direct reasoning
  • 02RAG/search systems
  • 03General toolboxes
  • 04Hugging Face toolbox
  • 05LangChain toolbox
  • 06Proprietary research reference

11

Results

Result board

GPQA

81.2%

Humanity’s Last Exam

23.8%

GAIA

66.13%

Result

Human evaluation

12

Ablation

The ablations test both the number of tools and the composition of the proposed toolbox. The three-tool combination—Web Search, Coding, and Mind-Map—performs best in the reported comparisons. Pairing tools produces complementary gains, while larger generic toolboxes can degrade performance because extra capabilities increase inappropriate tool-selection risk or duplicate capabilities already available in the reasoning model. Within the Web-Search agent, query breakdown, reranking, and Mind-Map reasoning context each improve the search pipeline; the paper also reports that Knowledge Refinement becomes redundant when combined with those components.

Evidence highlights

  • 01Toolbox-size ablation
  • 02Three-tool combination
  • 03Web Search + Mind-Map
  • 04Web Search + Coding
  • 05Query Breakdown
  • 06Rerank
  • 07Mind-Map reasoning context

13

Limitations

The reported gains depend on external retrieval and execution, so failures in search quality or tool outputs can propagate into the reasoning chain. The system also adds inference cost and latency because a single task may trigger multiple model and tool calls. Benchmark results do not by themselves establish reliability in unrestricted production settings, and the paper leaves open questions around tool-invocation reliability, reproducibility of the orchestration protocol, and robustness to misinformation in retrieved sources.

14

Conclusion

Agentic Reasoning shows a practical pattern for extending reasoning models: keep the core reasoner focused on inference while giving it selective access to search, computation, and structured memory. The main systems lesson is that capability comes from the interaction between the model and its tools, not from the model in isolation.

15

References

Primary paper: Junde Wu, Jiayuan Zhu, Yuyuan Liu, “Agentic Reasoning: Reasoning LLMs with Tools for the Deep Research,” arXiv:2502.04644. The work was subsequently published at ACL 2025 as “Agentic Reasoning: A Streamlined Framework for Enhancing LLM Reasoning with Agentic Tools.”

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